BoP Bioinformatics 2008 Really Useful Information and Links
Background and Algorithm Papers
	Repeat Scout Repeat Scout Power Point presentation
	Repeat Masker Tutorial
	Maverick Elements - Pritham et al
	HMMer - User's guide
	GBrowse links to Tutorial and documentation Tutorial at GiaridaDB Upload Annotation - Method 1 (not GFF) Upload Annotation - Method 2 (GFF3) - subsection of Tutorial at GiardiaDB Jay's GBrowse Howto - includes a simple Perl script for parsing data to GFF format GFF3 Specs Installed Genome Browsers GiardiaDB.org Giardia Scaffolds, BoP Giardia Contigs, BoP
Useful Database and Online Tool Links
	NCBI Blast
	EuPathDB
	GeneDB -
	Pfam